prsm_data =
{
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        "sequence_id": "3",
        "sequence_name": "sp|P66191|RL31_SALTY",
        "sequence_description": "50S ribosomal protein L31 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rpmE PE=3 SV=1",
        "compatible_proteoform_number": "2",
        "compatible_proteoform": [
            {
                "sequence_id": "3",
                "sequence_name": "sp|P66191|RL31_SALTY",
                "sequence_description": "50S ribosomal protein L31 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rpmE PE=3 SV=1",
                "proteoform_id": "3",
                "prsm_number": "2",
                "prsm": [
                    {
                        "prsm_id": "13",
                        "p_value": "5.05e-08",
                        "e_value": "5.05e-10",
                        "fdr": "0",
                        "matched_fragment_number": "25",
                        "matched_peak_number": "32",
                        "ms": {
                            "ms_header": {
                                "spectrum_file_name": "C:/toppic_tutorial/tutorial_2/st_1_ms2.msalign",
                                "ms1_ids": "315",
                                "ms1_scans": "615",
                                "ids": "299",
                                "scans": "616",
                                "precursor_mono_mass": "7942.0060",
                                "precursor_charge": "14",
                                "precursor_mz": "568.2934",
                                "feature_inte": "1.2611e+09"
                            }
                        },
                        "annotated_protein": {
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                            "proteoform_id": "3",
                            "sequence_name": "sp|P66191|RL31_SALTY",
                            "sequence_description": "50S ribosomal protein L31 OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=rpmE PE=3 SV=1",
                            "proteoform_mass": "7941.9763",
                            "n_acetylation": "0",
                            "unexpected_shift_number": "0",
                            "annotation": {
                                "protein_length": "70",
                                "first_residue_position": "0",
                                "last_residue_position": "69",
                                "residue": [
                                    {
                                        "position": "0",
                                        "acid": "M"
                                    },
                                    {
                                        "position": "1",
                                        "acid": "K"
                                    },
                                    {
                                        "position": "2",
                                        "acid": "K"
                                    },
                                    {
                                        "position": "3",
                                        "acid": "G"
                                    },
                                    {
                                        "position": "4",
                                        "acid": "I"
                                    },
                                    {
                                        "position": "5",
                                        "acid": "H"
                                    },
                                    {
                                        "position": "6",
                                        "acid": "P"
                                    },
                                    {
                                        "position": "7",
                                        "acid": "N"
                                    },
                                    {
                                        "position": "8",
                                        "acid": "Y"
                                    },
                                    {
                                        "position": "9",
                                        "acid": "V"
                                    },
                                    {
                                        "position": "10",
                                        "acid": "E"
                                    },
                                    {
                                        "position": "11",
                                        "acid": "I"
                                    },
                                    {
                                        "position": "12",
                                        "acid": "T"
                                    },
                                    {
                                        "position": "13",
                                        "acid": "A"
                                    },
                                    {
                                        "position": "14",
                                        "acid": "T"
                                    },
                                    {
                                        "position": "15",
                                        "acid": "C"
                                    },
                                    {
                                        "position": "16",
                                        "acid": "S"
                                    },
                                    {
                                        "position": "17",
                                        "acid": "C"
                                    },
                                    {
                                        "position": "18",
                                        "acid": "G"
                                    },
                                    {
                                        "position": "19",
                                        "acid": "N"
                                    },
                                    {
                                        "position": "20",
                                        "acid": "V"
                                    },
                                    {
                                        "position": "21",
                                        "acid": "I"
                                    },
                                    {
                                        "position": "22",
                                        "acid": "K"
                                    },
                                    {
                                        "position": "23",
                                        "acid": "T"
                                    },
                                    {
                                        "position": "24",
                                        "acid": "H"
                                    },
                                    {
                                        "position": "25",
                                        "acid": "S"
                                    },
                                    {
                                        "position": "26",
                                        "acid": "T"
                                    },
                                    {
                                        "position": "27",
                                        "acid": "V"
                                    },
                                    {
                                        "position": "28",
                                        "acid": "G"
                                    },
                                    {
                                        "position": "29",
                                        "acid": "H"
                                    },
                                    {
                                        "position": "30",
                                        "acid": "D"
                                    },
                                    {
                                        "position": "31",
                                        "acid": "L"
                                    },
                                    {
                                        "position": "32",
                                        "acid": "N"
                                    },
                                    {
                                        "position": "33",
                                        "acid": "L"
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                                        "position": "34",
                                        "acid": "D"
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                                        "position": "35",
                                        "acid": "V"
                                    },
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                                        "acid": "C"
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                                        "acid": "G"
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                                        "acid": "K"
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                                        "acid": "C"
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                                        "acid": "H"
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                                        "acid": "P"
                                    },
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                                        "acid": "F"
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                                        "acid": "F"
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                                        "acid": "T"
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                                        "acid": "Q"
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                                        "acid": "R"
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                                        "acid": "V"
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                                        "acid": "V"
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                                        "acid": "F"
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                                        "acid": "K"
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                                        "acid": "R"
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                                        "acid": "I"
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                                        "acid": "P"
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                            ],
                            "ptm": [
                                {
                                    "ptm_type": "Fixed",
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                                        "abbreviation": "Carbamidomethylation",
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                                    "occurence": [
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                                        {
                                            "left_pos": "17",
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                                        {
                                            "left_pos": "36",
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                                        {
                                            "left_pos": "39",
                                            "right_pos": "40",
                                            "anno": "C"
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                                    ]
                                },
                                {
                                    "ptm_type": "Variable",
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                                        "abbreviation": "Oxidation",
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                                    "occurence": {
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                                        "right_pos": "21",
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                            "mass_shift": {
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                                "left_position": "19",
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                                "anno": "Oxidation",
                                "shift_type": "variable ptm"
                            }
                        }
                    }
                }
            }
        ]
    }
}
